AtlasesΒΆ
bids_atlas comes with support of a large collection of commonly used publicly available atlases.
In the following you can find a respective list, indicating the atlas, the function to download it and its metadata.
AAL
Slice viewer
Function
from bids_atlas.datasets import get_AAL
AAL_atlas = get_AAL()
Meta-data
{
"Name": "Automated Anatomical Labeling Atlas - SPM12 version",
"Description": "PLEASE ADD",
"BIDSVersion": "PLEASE ADD",
"Curators": "PLEASE ADD",
"HowToAcknowledge": "PLEASE ADD",
"SourceDatasetsURLs": "PLEASE ADD",
"License": "PLEASE ADD",
"Funding": "PLEASE ADD",
"ReferencesAndLinks": "PLEASE ADD",
"Species": "PLEASE ADD",
"DerivedFrom": "PLEASE ADD",
"LevelType": "PLEASE ADD",
"SpecialReference": "PLEASE ADD"
}
Destrieux
Slice viewer
Function
from bids_atlas.datasets import get_Destrieux
AAL_atlas = get_Destrieux()
Meta-data
{
"Name": "Destrieux cortical deterministic atlas - 2009 version",
"Description": "Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature",
"BIDSVersion": "PLEASE ADD",
"Curators": "PLEASE ADD",
"HowToAcknowledge": "PLEASE ADD",
"SourceDatasetsURLs": "PLEASE ADD",
"License": "PLEASE ADD",
"Funding": "PLEASE ADD",
"ReferencesAndLinks": ["https://doi.org/10.1093/cercor/bhg087",
"https://doi.org/10.1016/j.neuroimage.2010.06.010"
],
"Species": "Human",
"DerivedFrom": "PLEASE ADD",
"LevelType": "PLEASE ADD",
"SpecialReference": "PLEASE ADD"
}
Destrieux
deterministic version
Function
from bids_atlas.datasets import get_HarvardOxford
AAL_atlas = get_HarvardOxford(type='dseg', threshold='25')
Meta-data
{
"Name": "Harvard-Oxford parcellations from FSL - deterministic version",
"Description": "Harvard-Oxford parcellations from FSL",
"BIDSVersion": "PLEASE ADD",
"Curators": "PLEASE ADD",
"HowToAcknowledge": "PLEASE ADD",
"SourceDatasetsURLs": "PLEASE ADD",
"License": "PLEASE ADD",
"Funding": "PLEASE ADD",
"ReferencesAndLinks": "PLEASE ADD",
"Species": "PLEASE ADD",
"DerivedFrom": "PLEASE ADD",
"LevelType": "PLEASE ADD",
"SpecialReference": "PLEASE ADD"
}
probabilistic version
Function
from bids_atlas.datasets import get_HarvardOxford
AAL_atlas = get_HarvardOxford(type='pseg')
Meta-data
{
"Name": "Harvard-Oxford parcellations from FSL - probabilistic version",
"Description": "Harvard-Oxford parcellations from FSL",
"BIDSVersion": "PLEASE ADD",
"Curators": "PLEASE ADD",
"HowToAcknowledge": "PLEASE ADD",
"SourceDatasetsURLs": "PLEASE ADD",
"License": "PLEASE ADD",
"Funding": "PLEASE ADD",
"ReferencesAndLinks": "PLEASE ADD",
"Species": "PLEASE ADD",
"DerivedFrom": "PLEASE ADD",
"LevelType": "PLEASE ADD",
"SpecialReference": "PLEASE ADD"
}